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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
UVM cis rs10461617 1 rs863840 chr5:56128999 C5orf35 chr5:56205103-56213010:+ 1 6.09 1.16E-7 Type 2 diabetes
UVM cis rs10461617 1 rs866222 chr5:56184444 C5orf35 chr5:56205103-56213010:+ 0.95 6.34 4.59E-8 Type 2 diabetes
UVM cis rs4660306 1 rs882803 chr1:45976147 CCDC163P chr1:45960581-45965646:- -0.83 -9.05 1.73E-12 Homocysteine levels
UVM cis rs2564921 1 rs891368 chr3:53123273 RFT1 chr3:53122503-53164470:- -0.37 -5.23 2.68E-6 Height
UVM cis rs9876781 1 rs922075 chr3:48489398 TREX1 chr3:48501186-48509043:+ 0.4 4.88 9.42E-6 Longevity
UVM cis rs10461617 1 rs9283717 chr5:56078659 C5orf35 chr5:56205103-56213010:+ 1.05 6.59 1.79E-8 Type 2 diabetes
UVM cis rs10935120 1 rs9289471 chr3:134230811 ANAPC13 chr3:134196547-134204865:- 0.46 7.06 3.0E-9 Height
UVM cis rs10935120 1 rs9289475 chr3:134236459 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs10935120 1 rs9289476 chr3:134237103 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs10935120 1 rs9289478 chr3:134268619 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs4395360 1 rs9289987 chr3:157314939 C3orf55 chr3:157261159-157319019:+ -0.4 -4.6 2.51E-5 Body mass index
UVM cis rs4395360 1 rs9289988 chr3:157320433 C3orf55 chr3:157261159-157319019:+ -0.4 -4.6 2.51E-5 Body mass index
UVM cis rs9296404 1 rs9296404 chr6:42925803 GNMT chr6:42928500-42931617:+ -0.65 -5.38 1.55E-6 Plasma homocysteine levels (post-methionine load test)
UVM cis rs9296404 1 rs9296404 chr6:42925803 PEX6 chr6:42931613-42946981:- 0.61 7.28 1.29E-9 Plasma homocysteine levels (post-methionine load test)
UVM cis rs2273 1 rs9307050 chr4:76905649 NAAA chr4:76831809-76862166:- -0.44 -4.99 6.33E-6 Longevity